Export the detected TSS from CapSet object as .bed files

Source: R/AllGenerics.R, R/detect_TSS.R

Export the detected TSS from CapSet object as .bed files

exportTSS(CSobject, outfile_prefix, pergroup = FALSE, merged = TRUE)

# S4 method for CapSet
exportTSS(CSobject, outfile_prefix, pergroup = FALSE,
  merged = TRUE)

Arguments

CSobject	The modified CapSet object after running detectTSS function
outfile_prefix	Prefix (with path) for output .bed files
pergroup	If TRUE, write output per group of samples
merged	If TRUE, write merged bed file (union of all groups)

Value

.bed file(s) containing detected TSS.

Examples

# load a previously saved CapSet object
cs <- exampleCSobject()
#> Checking de-multiplexed R1 reads
#> Checking de-multiplexed R2 reads
#> Checking mapped file
#> Checking de-duplicated file
# export tss
exportTSS(cs, merged = TRUE, outfile_prefix = "testTSS")
#> Writing merged .bed files