Filter PCR-duplicates from BAM file using internal UMIs

Source: R/filterDuplicates.R

Filter PCR-duplicates from BAM file using internal UMIs

filterDups(bamFile, outFile, keepPairs)

Arguments

bamFile	character. Input BAM file
outFile	character. Output (filtered) BAM file
keepPairs	logical. Keep R2 read?

Value

Filtered BAM file, after PCR duplicate removal