Perform stranded Bin counts

Source: R/detect_TSS.R

Perform stranded Bin counts

strandBinCounts(bam.files, restrictChrs, bam_param, bp_param, window_size,
  sliding = FALSE)

Arguments

bam.files

character vector. BAM files to use
restrictChrs

character vector. chromosomes to use
bam_param

ScanBAMParams
bp_param

BPPARAM
window_size

integer. size of window to use
sliding

logical. perform sliding window counts?

Value

RangedSE object with forward and reverse strand counts